The following links provide preprints of the published articles where permitted. Final versions are available on the official journal/conference websites.

	Optimizing the Design of FT-IR Spectroscopic Imaging Instruments to Obtain Increased Spatial Resolution of Chemical Species Rohith Reddy, David Mayerich, Michael Walsh, Matthew Schulmerich, Paul Scott Carney, Rohit Bhargava. IEEE International Symposium on Biomedical Imaging (ISBI), May 2012 (accepted)
	Rigorous Electromagnetic Model of FT-IR Spectroscopic Imaging Applied to Automated Histology of Prostate Tissue Specimens Rohith Reddy, David Mayerich, Michael Walsh, P. Scott Carney, Rohit Bhargava. International Conference on Optics, Lasers and Spectroscopy (ICOLS), Mar. 2012 (accepted)
	Specimen Preparation, Imaging, and Analysis Protocols for Knife-Edge Scanning Microscopy Yoonsuck Choe, David Mayerich, Jaerock Kwon, Daniel Miller, Chul Sung, Ji Ryang Chung, Todd Huffman, John Keyser, Louise Abbott. Journal of Visualized Experiments (58), e3248, Dec. 2011 [Paper/Video]
	Metrics for Comparing Explicit Representations of Interconnected Biological Networks David Mayerich, Chris Bjornsson, Jonathan Taylor, Badrinath Roysam. IEEE Symposium on Biological Data Visualization (IEEE BioVis), pp. 79-86, Oct. 2011 [Paper][Software]
	Fast Macro-Scale Imaging of Microvascular Networks Using Transmission KESM David Mayerich, Jaerock Kwon, Chul Sung, Louise Abbott, John Keyser, Yoonsuck Choe. Biomedical Optics Express, 2(10): 2888-2896, Oct. 2011 [Paper][Software+Data]
	Multiscale Exploration of Mouse Brain Microstructures Using the Knife-Edge Scanning Microscope Brain Atlas Ji Ryang Chung, Chul Sung, David Mayerich, Jaerock Kwon, Daniel Miller, Todd Huffman, John Keyser, Louise Abbott, Yoonsuck Choe. Frontiers in Neuroinformatics, 5:29, Nov. 2011.         *special topic on Mapping the Connectome: Multi-Level Analysis of Brain Connectivity [Paper][Software]
	Knife-Edge Scanning Microscopy for Connectomics Research Yoonsuck Choe, David Mayerich, Jaerock Kwon, Daniel Miller, Ji Ryang Chung, Chul Sung, John Keyser, Louise Abbott. IEEE International Joint Conference on Neural Networks (IJCNN), pp. 2258-2265, Jul. 2011 [Paper]
	Fast Cell Detection in High-Throughput Imagery Using GPU-Accelerated Machine Learning David Mayerich, Jaerock Kwon, Aaron Panchal, John Keyser, Yoonsuck Choe. IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pp. 719-723, Mar. 2011 [Paper]
	Automated Cropping and Artifact Removal for Knife-Edge Scanning Microscopy Jaerock Kwon, David Mayerich, Yoonsuck Choe. IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pp. 1366-1369, Mar. 2011 [Paper]
	Hardware Accelerated Segmentation of Complex Volumetric Filament Networks David Mayerich, John Keyser. IEEE Transactions on Visualization and Computer Graphics, 15(4): 670-681, Jul.-Aug. 2009. [Paper]
	Visualization of Cellular and Microvascular Relationships David Mayerich, Louise Abbott, John Keyser. IEEE Transactions on Visualization and Computer Graphics, 14(6): 1611-1618, Nov.-Dec. 2008.         *appears in Proceedings of IEEE Visualization 2008 [Paper]
	Knife-Edge Scanning Microscopy for Imaging and Reconstruction of Three-Dimensional Anatomical Structures of the Mouse Brain David Mayerich, Louise Abbott, Bruce McCormick. Journal of Microscopy, 231(1): 134-143, Jul. 2008.         *cover image [Paper]
	Constructing High-Resolution Microvascular Models David Mayerich, Jaerock Kwon, Yoonsuck Choe, Louise Abbott, John Keyser. Microscopic Image Analysis with Applications in Biology (MIAAB), Sept. 2008         *images appear in Portraits of the Mind: Visualizing the Brain from Antiquity to the 21st Century, C. Schoonover (ed.) [Paper] [Book]
	Automated Lateral Sectioning for Knife-Edge Scanning Microscopy Jaerock Kwon, David Mayerich, Yoonsuck Choe, Bruce McCormick. IEEE International Symposium on Biomedical Imaging (IEEE ISBI), May 2008 [Paper]
	Noise and Artifact Removal in Knife-Edge Scanning Microscopy David Mayerich, Bruce McCormick, John Keyser. IEEE International Symposium on Biomedical Imaging (IEEE ISBI), Apr. 2007 [Paper]
	Visualization of Fibrous and Thread-like Data Zeki Melek, David Mayerich, Cem Yuksel, John Keyser. IEEE Transactions on Visualization and Computer Graphics, 12(5): 1165-1172, Oct. 2006.         *appears in Proceedings of IEEE Visualization 2006 [Paper]
	Construction of Anatomically Correct Models of Mouse Brain Networks Bruce McCormick, Wonryull Koh, Yoonsuck Choe, Louise Abbott, John Keyser, David Mayerich, Zeki Melek, Purna Doddapaneni. Neurocomputing, 58-60: 379-386, Apr. 2004. [Paper]

	Designing Transfer Functions for Exploring Hyperspectral Images David Mayerich, Michael Walsh, Rohit Bhargava, Proceedings IEEE Visualization (IEEE VIS), Oct. 2011 [Paper] [Software]
	Comparing the MOST Technique to KESM David Mayerich, Yoonsuck Choe, John Keyser, Jaerock Kwon, Louise Abbott, Science E-Letters, Apr. 2011 [Letter]
	GPU-based Dynamic Tubular Grids for Sparse Volume Rendering David Mayerich, John Keyser. Proceedings of IEEE Visualization (IEEE VIS), Oct. 2010. [Paper] [Poster]
	Charting Out the Octopus Connectome at Submicron Resolution Using the Knife-Edge Scanning Microscope Yoonsuck Choe, Louise Abbott, Giovanna Ponte, John Keyser, Jaerock Kwon, David Mayerich, Daniel Miller, Donghyeop Han, Anna Grimaldi, Graziano Fiorito, David Edelman, Jeffrey McKinstry. BMC Neuroscience, Jul. 2010.         *appears in Proceedings of the 19th Annual Computational Neuroscience Meeting (CNS*2010) [Paper]
	Filament Tracking and Encoding for Complex Biological Networks David Mayerich, John Keyser. Proceedings of the ACM Symposium on Solid and Physical Modeling (SPM), Jun. 2008 [Paper]

Knife-Edge Scanning Microscopy: High-Throughput Imaging and Analysis of Massive Volumes of Biological Microstructures Yoonsuck Choe, Louise Abbott, Donghyeop Han, P. Huang, John Keyser, Jaerock Kwon, David Mayerich, Zeki Melek, Bruce McCormick. High-Throughput Image Reconstruction and Analysis: Intelligent Microscopy Applications, Series on Bioinformatics and Biomedical Imaging, Artech House Publishers, 11-34, 2009. [Amazon]

Processing and Visualization methods for High-Throughput Biomedical Imaging
Beckman Institute Director's Seminar, July 2012.

GPU-based Segmentation and Visualization of High-Throughput Microscopy Datasets
David Mayerich, Yoonsuck Choe, John Keyser.
Workshop on High-Throughput 3D Microscopy and High-Performance Computing for Multi-Scale Modeling and Simulation of Large-Scale Neuronal Circuits, Computational Neuroscience (CNS*2010), July 2010.

High-Throughput Imaging of the Whole Mouse Brain Using Knife-Edge Scanning Microscopy
Louise Abbott, David Mayerich, Jaerock Kwon, Yoonsuck Choe.
Workshop on High-Throughput 3D Microscopy and High-Performance Computing for Multi-Scale Modeling and Simulation of Large-Scale Neuronal Circuits, Computational Neuroscience (CNS*2010), July 2010.

A Short Course on Interactive Graphics
Computer Science Department Seminar, Southwestern Oklahoma State University, January 2008

Imaging, Modeling, and Visualization of Tissue Microstructure
IEEE Visualization 2008, Ph.D. Colloquium, October 2008

Acquisition and Reconstruction in Large Scale Volume Microscopy
National Science Foundation Symposium on Cyber-Enabled Development and Innovation, Ph.D. Colloquium, 2007.

Nanomachining for High-Resolution Scanning of Mammalian Brain Microstructure
Bruce McCormick, David Mayerich, Marian Wiercigroch.
International Conference on Fracture, March 2005.

High-Resolution Mid-Infrared Imaging for Disease Diagnosis
Michael Walsh, David Mayerich, Andre Kajdacsy-Balla, Rohit Bhargava
SPIE Photonics West, Jan. 2012

Knife-Edge Scanning Microscope Brain Atlas: A Submicrometer-Resolution Web-Based Mouse Brain Atlas
Chul Sung, David Mayerich, Jaerock Kwon, Daniel Miller, Todd Huffman, John Keyser, Louise Abbott, Yoonsuck Choe
Society for Neuroscience, Nov. 2011

Mid-Infrared Spectroscopic Imaging for Breast Tissue Diagnosis
Michael Walsh, David Mayerich, Rohit Bhargava.
Federation of Analytical Chemistry and Spectroscopy Societies (FACSS), Oct. 2011

Developing Chemical Imaging for Single Molecule to Massively Multiplexed Molecular Sensing in Pathology
Rohit Bhargava, Michael Walsh, Anil Kodali, David Mayerich, Andre Kajdacsy-Balla.
Federation of Analytical Chemistry and Spectroscopy Societies (FACSS), Oct. 2011

Mid-Infrared Spectroscopic Imaging for Tissue Histopathology
Michael Walsh, David Mayerich, Andre Kajdacsy-Balla, Rohit Bhargava.
Sixth International Conference on Advanced Vibrational Spectroscopy (ICAVS-6), 2011

Automated Cropping and Artifact Removal for Knife-Edge Scanning Microscopy
Jaerock Kwon, David Mayerich, Yoonsuck Choe.
Society for Neuroscience, Nov. 2010.

Multiscale Imaging, Analysis, and Integration of Mouse Brain Networks
Yoonsuck Choe, Louise Abbott, John Keyser, Daniel Miller, Donghyeop Han, Huei-Fang Yang, Ji Chung, C Sung, David Mayerich, Jaerock Kwon, Kristina Micheva, Stephen Smith.
Society for Neuroscience, Nov. 2010.

Mid-IR Imaging for the Identification of Cells and Mucin in the Gastrointestinal Tract
Michael Walsh, Jason Ip, David Mayerich, Jennifer Croix, Ann Benefiel-Kunkel, Rex Gaskins, Rohit Bhargava.
Federation of Analytical Chemistry and Spectroscopy Societies, Oct. 2010.

Mid-Infrared Imaging as a Label-Free Alternative to Immunohistochemistry for Breast Pathology
Michael Walsh, David Mayerich, Nell Pounder, Elizabeth Wiley, Andre Kajdacsy-Balla, Rohit Bhargava.
Federation of Analytical Chemistry and Spectroscopy Societies, Oct. 2010.

Knife-Edge Scanning Microscope Using an Ultra-Precision 3-Axis CNC Diamond Turning Lathe
Bruce McCormick, Marian Wiercigroch, David Mayerich, May 2005.
[Paper]

Brain Tissue Scanner: User Interface
Colby Stephens, David Mayerich, August 2003.